BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB026E11LP1|AL428569
(828 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1461 1563 0.0
3x_Contig1530 837 0.0
3x_Contig18 485 e-137
>3x_Contig1461
Length = 5478
Score = 1563 bits (786), Expect = 0.0
Identities = 815/826 (98%), Gaps = 1/826 (0%)
Strand = Plus / Minus
Query: 4 aaagattaagccatgcatgtctaagtataagcaatttatacagtgaamtgcgaatggctc 63
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||
Sbjct: 1998 aaagattaagcaatgcatgtataagtataagcaatttatacagtgaaatgcgaatgggtc 1939
Query: 64 attaaatcagttatcgtttatttgawagttcctttactacatggatatctgtggtaattc 123
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1938 attaaatcagttatcgtttatttgatagttcctttactacatggatatctgtggtaattc 1879
Query: 124 tagagctaatacatgcttaaaatctcgaccctttggaagagatgtatttattagataaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1878 tagagctaatacatgcttaaaatctcgaccctttggaagagatgtatttattagataaaa 1819
Query: 184 aatcaatgtcttcggactccttgatgattcataataacttttcgaatcgcatggccttgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1818 aatcaatgtcttcggactccttgatgattcataataacttttcgaatcgcatggccttgt 1759
Query: 244 gctggcgatggttcattcaaatttctgccctatcaactttcgatggtaggatagtggcct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1758 gctggcgatggttcattcaaatttctgccctatcaactttcgatggtaggatagtggcct 1699
Query: 304 accatggtttcaacgggtaacggggaataagggttcgattccggagagggagcctgagaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1698 accatggtttcaacgggtaacggggaataagggttcgattccggagagggagcctgagaa 1639
Query: 364 acggctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaattcaggga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1638 acggctaccacatccaaggaaggcagcaggcgcgcaaattacccaatcctaattcaggga 1579
Query: 424 ggtagtgacaataaataacgatacagggcccattcgggtcttgtaattggratgagtaca 483
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1578 ggtagtgacaataaataacgatacagggcccattcgggtcttgtaattggaatgagtaca 1519
Query: 484 atgtaaataccttaacgaggaacaactggagggcaagtctggtgccagcagccgcggtaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1518 atgtaaataccttaacgaggaacaactggagggcaagtctggtgccagcagccgcggtaa 1459
Query: 544 ttccagctccagtagcgtatattaaagttgttgcagttaaaaagctcgtagttgaacttt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1458 ttccagctccagtagcgtatattaaagttgttgcagttaaaaagctcgtagttgaacttt 1399
Query: 604 gggtctggttgtccggtccgactttatgtcgcgcactggttttcaaccggatctttcctt 663
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1398 gggtctggttgtccggtccgactttatgtcgcgcactggttatcaaccggatctttcctt 1339
Query: 664 ctggctaacctgtactccttgtgggtgcaggcgaaccaggacttttactttgaaaaaatt 723
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1338 ctggctaacctgtactccttgtgggtgcaggcgaaccattacttttactttgaaaaaatt 1279
Query: 724 agagtgttcaaagcaggcg-aarctcgaatatattagcatggaataatggaataggacgt 782
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 1278 agagtgttcaaagcaggcgaaagctcgaatatattagcatggaataatggaataggacgt 1219
Query: 783 ttggttctattttgttggtttctaggaccatcgtaatgattaatag 828
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1218 ttggttctattttgttggtttctaggaccatcgtaatgattaatag 1173
>3x_Contig1530
Length = 6216
Score = 837 bits (421), Expect = 0.0
Identities = 457/469 (97%), Gaps = 1/469 (0%)
Strand = Plus / Plus
Query: 338 tcgattccggagagggagcctgagaaacggctaccacatccaaggaaggcagcaggcgcg 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tcgattccggagagggagcctgagaaacggctaccacatccaaggaaggcagcaggcgcg 73
Query: 398 caaattacccaatcctaattcagggaggtagtgacaataaataacgatacagggcccatt 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 caaattacccaatcctaattcagggaggtagtgacaataaataacgatacagggcccatt 133
Query: 458 cgggtcttgtaattggratgagtacaatgtaaataccttaacgaggaacaactggagggc 517
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 cgggtcttgtaattggaatgagtacaatgtaaataccttaacgaggaacaactggagggc 193
Query: 518 aagtctggtgccagcagccgcggtaattccagctccagtagcgtatattaaagttgttgc 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aagtctggtgccagcagccgcggtaattccagctccagtagcgtatattaaagttgttgc 253
Query: 578 agttaaaaagctcgtagttgaactttgggtctggttgtccggtccgactttatgtcgcgc 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agttaaaaagctcgtagttgaactttgggtctggttgtccggtccgactttatgtcgcgc 313
Query: 638 actggttttcaaccggatctttccttctggctaacctgtactccttgtgggtgcaggcga 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 actggttttcaaccggatctttccttctggctaacctgtactccttgtgggtgcaggcga 373
Query: 698 accaggacttttactttgaaaaaattagagtgttcaaagcaggcg-aarctcgaatatat 756
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 374 accaggacttttactttgaaaaaattagagtgttcaaagcaggcgaaagctcgaatatat 433
Query: 757 tagcatggaataatggaataggacgtttggttctattttgttggtttct 805
|||||||| | ||| | || ||||||||||| ||||||||||||||
Sbjct: 434 tagcatggcctcctggcctcggccgtttggttctcttttgttggtttct 482
>3x_Contig18
Length = 1116
Score = 485 bits (244), Expect = e-137
Identities = 246/248 (99%)
Strand = Plus / Plus
Query: 40 tatacagtgaamtgcgaatggctcattaaatcagttatcgtttatttgawagttccttta 99
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 39 tatacagtgaaatgcgaatggctcattaaatcagttatcgtttatttgatagttccttta 98
Query: 100 ctacatggatatctgtggtaattctagagctaatacatgcttaaaatctcgaccctttgg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 ctacatggatatctgtggtaattctagagctaatacatgcttaaaatctcgaccctttgg 158
Query: 160 aagagatgtatttattagataaaaaatcaatgtcttcggactccttgatgattcataata 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 aagagatgtatttattagataaaaaatcaatgtcttcggactccttgatgattcataata 218
Query: 220 acttttcgaatcgcatggccttgtgctggcgatggttcattcaaatttctgccctatcaa 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 acttttcgaatcgcatggccttgtgctggcgatggttcattcaaatttctgccctatcaa 278
Query: 280 ctttcgat 287
||||||||
Sbjct: 279 ctttcgat 286
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4625
Number of Sequences: 1807
Number of extensions: 4625
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 3
length of query: 828
length of database: 10,358,551
effective HSP length: 16
effective length of query: 812
effective length of database: 10,329,639
effective search space: 8387666868
effective search space used: 8387666868
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.4 bits)
S2: 50 (99.9 bits)